Variant report

Variant	rs1366651
Chromosome Location	chr5:15566295-15566296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10037317	0.86[EUR][1000 genomes]
rs10474717	0.80[JPT][hapmap]
rs13184823	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366653	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1429037	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1429039	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1429040	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1429041	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1835130	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1835131	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1835132	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1835133	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1978633	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2402166	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2402167	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4702084	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4702086	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6420022	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6420023	0.86[ASN][1000 genomes]
rs6554887	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6554888	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6895002	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7733607	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7734082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9312893	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9312894	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs969351	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs972182	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs983889	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
2	chr5:15551400-15566800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:15555800-15571800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:15555800-15584200	Weak transcription	HSMM	muscle
5	chr5:15558800-15574800	Weak transcription	Fetal Stomach	stomach
6	chr5:15559200-15574800	Weak transcription	Aorta	Aorta
7	chr5:15560800-15573600	Weak transcription	Fetal Kidney	kidney
8	chr5:15562000-15567200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:15562400-15566800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:15562400-15573600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:15564000-15568200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:15564000-15574800	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:15565400-15566400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:15565800-15567600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:15566000-15567600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:15566000-15567600	Enhancers	NHDF-Ad	bronchial
17	chr5:15566200-15567000	Enhancers	Colon Smooth Muscle	Colon
18	chr5:15566200-15567400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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