Variant report

Variant	rs1006613
Chromosome Location	chr14:65289535-65289536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17826231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189087	1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
3	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
4	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
5	chr14:65283600-65289600	Weak transcription	Fetal Heart	heart
6	chr14:65284600-65289800	Weak transcription	Left Ventricle	heart
7	chr14:65284800-65289600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:65285000-65289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:65285000-65289800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:65285000-65290200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:65285400-65289800	Weak transcription	Spleen	Spleen
12	chr14:65287400-65289600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65287400-65289600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:65287400-65289800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:65288800-65289800	Weak transcription	HSMMtube	muscle
16	chr14:65289200-65289600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:65289200-65289800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
18	chr14:65289200-65290200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:65289200-65290600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:65289200-65290800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr14:65289200-65291600	Genic enhancers	K562	blood
22	chr14:65289400-65289600	Enhancers	Brain Substantia Nigra	brain
23	chr14:65289400-65289800	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
24	chr14:65289400-65290000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:65289400-65290000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:65289400-65290200	Enhancers	Placenta	Placenta
27	chr14:65289400-65290400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr14:65289400-65290600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:65289400-65290800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:65289400-65291200	Enhancers	Right Ventricle	heart

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