Variant report

Variant	rs10066472
Chromosome Location	chr5:148130310-148130311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10064657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952301	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11953048	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13358560	1.00[ASN][1000 genomes]
rs6580570	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580571	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580572	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580573	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580575	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580576	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580577	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877622	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6885180	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6898652	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7700539	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7719592	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7738035	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
2	chr5:148125400-148131200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148125600-148131600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:148125800-148130800	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:148127600-148131600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:148129200-148131800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:148129400-148130800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:148129800-148130600	Enhancers	Adipose Nuclei	Adipose
9	chr5:148130200-148130400	Enhancers	Primary B cells from cord blood	blood
10	chr5:148130200-148130400	Enhancers	Fetal Heart	heart
11	chr5:148130200-148130600	Enhancers	Spleen	Spleen
12	chr5:148130200-148131000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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