Variant report

Variant	rs6580571
Chromosome Location	chr5:148127058-148127059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:148125293..148127196-chr5:148490991..148493679,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10055423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064657	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10066472	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10072157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075525	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078988	0.96[AFR][1000 genomes]
rs10079055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949281	1.00[AMR][1000 genomes]
rs11952301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953886	1.00[JPT][hapmap]
rs13358560	0.88[ASN][1000 genomes]
rs13360245	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13360714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580572	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580574	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884542	0.97[AFR][1000 genomes]
rs6885180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889577	0.84[ASN][1000 genomes]
rs6898652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710734	1.00[AMR][1000 genomes]
rs7715328	1.00[JPT][hapmap]
rs7719592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885585	0.87[AFR][1000 genomes]
rs989875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
2	chr5:148125400-148131200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148125600-148127600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:148125600-148128800	Enhancers	Fetal Heart	heart
5	chr5:148125600-148131600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:148125800-148130800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:148126200-148127200	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:148126200-148127800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:148126200-148127800	Enhancers	K562	blood
10	chr5:148126200-148129400	Enhancers	Adipose Nuclei	Adipose
11	chr5:148126400-148127200	Enhancers	NHEK	skin
12	chr5:148126400-148127400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:148126400-148127400	Enhancers	Fetal Lung	lung
14	chr5:148126400-148127400	Enhancers	GM12878-XiMat	blood
15	chr5:148126400-148129000	Enhancers	Primary B cells from cord blood	blood
16	chr5:148126800-148127200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:148126800-148127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:148126800-148127400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:148126800-148127400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:148126800-148129400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr5:148127000-148127200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr5:148127000-148128000	Enhancers	Fetal Thymus	thymus

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