Variant report

Variant	rs10055423
Chromosome Location	chr5:148132818-148132819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:148131590..148133223-chr5:148139053..148141368,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10072157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10078988	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10079055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952301	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11953048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955927	1.00[EUR][1000 genomes]
rs11957071	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13360714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs41381548	1.00[EUR][1000 genomes]
rs6580571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580572	0.92[AFR][1000 genomes]
rs6580573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6864773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6877622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883576	1.00[EUR][1000 genomes]
rs6884542	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6885180	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs6898652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7700539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7738035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885585	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs989875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs989876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
2	chr5:148132600-148134400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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