Variant report

Variant	rs11955927
Chromosome Location	chr5:148184323-148184324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:148176798..148179293-chr5:148182053..148184338,2	K562	blood:
2	chr5:148181967..148184743-chr5:148187173..148189095,2	MCF-7	breast:

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10055423	1.00[EUR][1000 genomes]
rs10072157	1.00[EUR][1000 genomes]
rs10078988	1.00[EUR][1000 genomes]
rs10079055	1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[EUR][1000 genomes]
rs11957071	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	1.00[EUR][1000 genomes]
rs13360714	1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs6580574	1.00[EUR][1000 genomes]
rs6580581	1.00[EUR][1000 genomes]
rs6864773	1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6884542	1.00[EUR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[EUR][1000 genomes]
rs7720203	1.00[EUR][1000 genomes]
rs9885585	1.00[EUR][1000 genomes]
rs989875	1.00[EUR][1000 genomes]
rs989876	1.00[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148175800-148185000	Weak transcription	Osteobl	bone
2	chr5:148178800-148188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:148179000-148188400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:148182200-148185200	Weak transcription	Liver	Liver
5	chr5:148183400-148184800	Enhancers	GM12878-XiMat	blood
6	chr5:148183400-148185000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:148183400-148185000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:148183600-148185400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:148183600-148185800	Enhancers	Fetal Heart	heart
10	chr5:148183600-148188400	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:148183600-148188400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:148183800-148185000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:148183800-148185200	Enhancers	Primary B cells from cord blood	blood
14	chr5:148183800-148188600	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:148184000-148185000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:148184000-148185000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr5:148184000-148185000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:148184000-148185200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:148184000-148185600	Enhancers	K562	blood
20	chr5:148184000-148186800	Weak transcription	Right Atrium	heart
21	chr5:148184000-148188400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr5:148184000-148189000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:148184200-148184400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr5:148184200-148184600	Enhancers	Right Ventricle	heart
25	chr5:148184200-148184800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links