Variant report

Variant	rs11957071
Chromosome Location	chr5:148186050-148186051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:147762751..147765340-chr5:148184433..148187001,2	K562	blood:
2	chr5:148168454..148171371-chr5:148185797..148188904,3	K562	blood:
3	chr5:148179877..148182674-chr5:148184717..148188812,4	K562	blood:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction
ENSG00000247199	Chromatin interaction

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10055423	1.00[EUR][1000 genomes]
rs10072157	1.00[EUR][1000 genomes]
rs10078988	1.00[EUR][1000 genomes]
rs10079055	1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[EUR][1000 genomes]
rs11955927	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	1.00[EUR][1000 genomes]
rs13360714	1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs6580574	1.00[EUR][1000 genomes]
rs6580581	1.00[EUR][1000 genomes]
rs6864773	1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6884542	1.00[EUR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[EUR][1000 genomes]
rs7720203	1.00[EUR][1000 genomes]
rs9885585	1.00[EUR][1000 genomes]
rs989875	1.00[EUR][1000 genomes]
rs989876	1.00[EUR][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148178800-148188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:148179000-148188400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148183600-148188400	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:148183600-148188400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:148183800-148188600	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:148184000-148186800	Weak transcription	Right Atrium	heart
7	chr5:148184000-148188400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr5:148184000-148189000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:148184600-148186400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:148184600-148190200	Enhancers	HUVEC	blood vessel
11	chr5:148184800-148186200	Flanking Active TSS	GM12878-XiMat	blood
12	chr5:148184800-148187000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:148184800-148187200	Enhancers	Adipose Nuclei	Adipose
14	chr5:148184800-148187600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:148184800-148190600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr5:148185000-148186200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:148185000-148186400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:148185000-148186600	Enhancers	Fetal Muscle Trunk	muscle
19	chr5:148185000-148187200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr5:148185000-148187400	Enhancers	Fetal Muscle Leg	muscle
21	chr5:148185000-148187600	Enhancers	Spleen	Spleen
22	chr5:148185000-148187800	Enhancers	Left Ventricle	heart
23	chr5:148185000-148188400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:148185000-148189400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr5:148185200-148186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:148185200-148186200	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr5:148185200-148186400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:148185200-148187000	Weak transcription	Right Ventricle	heart
29	chr5:148185200-148187200	Weak transcription	Esophagus	oesophagus
30	chr5:148185200-148187800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:148185400-148186200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:148185400-148186600	Enhancers	Stomach Mucosa	stomach
33	chr5:148185400-148187400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:148185400-148188200	Weak transcription	Hela-S3	cervix
35	chr5:148185400-148188400	Weak transcription	NHLF	lung
36	chr5:148185600-148186400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:148185600-148186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr5:148185600-148187000	Weak transcription	Liver	Liver
39	chr5:148185600-148188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:148185600-148188400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr5:148185600-148188400	Weak transcription	HMEC	breast
42	chr5:148185800-148186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:148185800-148186200	Weak transcription	Lung	lung
44	chr5:148185800-148186400	Enhancers	Duodenum Mucosa	Duodenum
45	chr5:148185800-148186600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr5:148185800-148186600	Weak transcription	Fetal Thymus	thymus
47	chr5:148186000-148186200	Enhancers	Fetal Heart	heart
48	chr5:148186000-148186400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr5:148186000-148186400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:148186000-148186600	Enhancers	Brain Anterior Caudate	brain

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