Variant report

Variant	rs6580574
Chromosome Location	chr5:148127295-148127296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10055423	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10078988	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10079055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11953048	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955927	1.00[EUR][1000 genomes]
rs11957071	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13360714	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs41381548	1.00[EUR][1000 genomes]
rs6580571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580572	0.96[AFR][1000 genomes]
rs6580573	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580575	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580576	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6864773	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6877622	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883576	1.00[EUR][1000 genomes]
rs6884542	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6885180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs6898652	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7700539	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719592	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7738035	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885585	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs989875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs989876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
2	chr5:148125400-148131200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148125600-148127600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:148125600-148128800	Enhancers	Fetal Heart	heart
5	chr5:148125600-148131600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:148125800-148130800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:148126200-148127800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:148126200-148127800	Enhancers	K562	blood
9	chr5:148126200-148129400	Enhancers	Adipose Nuclei	Adipose
10	chr5:148126400-148127400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:148126400-148127400	Enhancers	Fetal Lung	lung
12	chr5:148126400-148127400	Enhancers	GM12878-XiMat	blood
13	chr5:148126400-148129000	Enhancers	Primary B cells from cord blood	blood
14	chr5:148126800-148127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:148126800-148127400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:148126800-148127400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:148126800-148129400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr5:148127000-148128000	Enhancers	Fetal Thymus	thymus
19	chr5:148127200-148127400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:148127200-148128200	Weak transcription	Primary B cells from peripheral blood	blood

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