Variant report

Variant	rs6883576
Chromosome Location	chr5:147972788-147972789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10036018	1.00[EUR][1000 genomes]
rs10038033	1.00[EUR][1000 genomes]
rs10038886	1.00[EUR][1000 genomes]
rs10053544	1.00[EUR][1000 genomes]
rs10055423	1.00[EUR][1000 genomes]
rs10072157	1.00[EUR][1000 genomes]
rs10077951	1.00[EUR][1000 genomes]
rs10078988	1.00[EUR][1000 genomes]
rs10079055	1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	1.00[EUR][1000 genomes]
rs13360714	1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs41381548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580574	1.00[EUR][1000 genomes]
rs6580581	1.00[EUR][1000 genomes]
rs6864773	1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6871631	1.00[EUR][1000 genomes]
rs6878503	1.00[EUR][1000 genomes]
rs6879119	1.00[EUR][1000 genomes]
rs6884542	1.00[EUR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs73266460	1.00[EUR][1000 genomes]
rs764416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7704797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710734	1.00[EUR][1000 genomes]
rs7720203	1.00[EUR][1000 genomes]
rs9325099	1.00[EUR][1000 genomes]
rs9325100	1.00[EUR][1000 genomes]
rs9885585	1.00[EUR][1000 genomes]
rs989875	1.00[EUR][1000 genomes]
rs989876	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023832	chr5:147920935-148110926	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537917	chr5:147920935-148110926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147968000-147973200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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