Variant report

Variant	rs6879119
Chromosome Location	chr5:147841360-147841361
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10036018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10042118	1.00[EUR][1000 genomes]
rs10053544	1.00[EUR][1000 genomes]
rs10058828	0.82[AFR][1000 genomes]
rs10067605	1.00[EUR][1000 genomes]
rs10075715	1.00[EUR][1000 genomes]
rs10077951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109558	1.00[EUR][1000 genomes]
rs13355381	1.00[EUR][1000 genomes]
rs13355813	1.00[EUR][1000 genomes]
rs13362082	1.00[EUR][1000 genomes]
rs1835913	1.00[EUR][1000 genomes]
rs1835914	1.00[EUR][1000 genomes]
rs2288779	1.00[EUR][1000 genomes]
rs2400501	1.00[EUR][1000 genomes]
rs41381548	1.00[EUR][1000 genomes]
rs56306866	1.00[EUR][1000 genomes]
rs61618834	1.00[EUR][1000 genomes]
rs6580540	1.00[EUR][1000 genomes]
rs6580541	1.00[EUR][1000 genomes]
rs6871631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6879289	1.00[EUR][1000 genomes]
rs6881998	1.00[EUR][1000 genomes]
rs6883576	1.00[EUR][1000 genomes]
rs6891158	1.00[EUR][1000 genomes]
rs73266460	1.00[EUR][1000 genomes]
rs73276475	1.00[EUR][1000 genomes]
rs73278528	1.00[EUR][1000 genomes]
rs73278535	1.00[EUR][1000 genomes]
rs73795067	1.00[EUR][1000 genomes]
rs73795069	1.00[EUR][1000 genomes]
rs7708548	1.00[EUR][1000 genomes]
rs9325099	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9325100	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147835800-147845000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:147835800-147848000	Weak transcription	Right Ventricle	heart
3	chr5:147836200-147844600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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