Variant report

Variant	rs1835914
Chromosome Location	chr5:147660078-147660079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10036018	1.00[EUR][1000 genomes]
rs10036463	1.00[EUR][1000 genomes]
rs10038033	1.00[EUR][1000 genomes]
rs10038266	1.00[EUR][1000 genomes]
rs10042118	1.00[EUR][1000 genomes]
rs10053544	1.00[EUR][1000 genomes]
rs10056490	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10067605	1.00[EUR][1000 genomes]
rs10074211	1.00[EUR][1000 genomes]
rs10075715	1.00[EUR][1000 genomes]
rs10077951	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs12109558	1.00[EUR][1000 genomes]
rs12659499	1.00[EUR][1000 genomes]
rs13355381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13355813	1.00[EUR][1000 genomes]
rs13362082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs1835913	1.00[EUR][1000 genomes]
rs2288779	1.00[EUR][1000 genomes]
rs2400501	1.00[EUR][1000 genomes]
rs28408445	1.00[EUR][1000 genomes]
rs56306866	1.00[EUR][1000 genomes]
rs58888156	1.00[EUR][1000 genomes]
rs59746579	1.00[EUR][1000 genomes]
rs61618834	1.00[EUR][1000 genomes]
rs6580540	1.00[EUR][1000 genomes]
rs6580541	1.00[EUR][1000 genomes]
rs6868404	1.00[EUR][1000 genomes]
rs6871631	1.00[EUR][1000 genomes]
rs6875394	1.00[EUR][1000 genomes]
rs6878503	1.00[EUR][1000 genomes]
rs6879119	1.00[EUR][1000 genomes]
rs6879289	1.00[EUR][1000 genomes]
rs6881998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891158	1.00[EUR][1000 genomes]
rs6897251	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73266460	1.00[EUR][1000 genomes]
rs73276475	1.00[EUR][1000 genomes]
rs73278528	1.00[EUR][1000 genomes]
rs73278535	1.00[EUR][1000 genomes]
rs73795067	1.00[EUR][1000 genomes]
rs73795069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7708548	1.00[EUR][1000 genomes]
rs7709265	1.00[EUR][1000 genomes]
rs9325099	1.00[EUR][1000 genomes]
rs9325100	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv883016	chr5:147640718-147689700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv883017	chr5:147640718-147689700	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883018	chr5:147640718-147691470	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv462479	chr5:147648510-147688035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv599943	chr5:147648510-147688035	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv462480	chr5:147648510-147689700	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv599944	chr5:147648510-147689700	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv883019	chr5:147648750-147689700	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv883020	chr5:147649181-147688035	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv599945	chr5:147649181-147720487	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147648400-147660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:147648600-147661400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:147658800-147663200	Weak transcription	Hela-S3	cervix
4	chr5:147659800-147661200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:147660000-147660200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:147660000-147660200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:147660000-147661200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:147660000-147661200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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