Variant report

Variant	rs10056490
Chromosome Location	chr5:147518725-147518726
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147511830..147514610-chr5:147516441..147519250,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042118	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10065895	1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067605	1.00[EUR][1000 genomes]
rs10070673	1.00[EUR][1000 genomes]
rs10074211	1.00[EUR][1000 genomes]
rs10075715	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515598	1.00[EUR][1000 genomes]
rs10515604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109558	1.00[EUR][1000 genomes]
rs12659499	1.00[EUR][1000 genomes]
rs13355381	1.00[EUR][1000 genomes]
rs13362082	1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs17107570	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs1835913	1.00[EUR][1000 genomes]
rs1835914	1.00[EUR][1000 genomes]
rs2288779	1.00[EUR][1000 genomes]
rs2400501	1.00[EUR][1000 genomes]
rs28408445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433470	1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs56121007	1.00[EUR][1000 genomes]
rs56306866	1.00[EUR][1000 genomes]
rs57804951	1.00[EUR][1000 genomes]
rs58888156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59746579	1.00[EUR][1000 genomes]
rs60076377	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs61618834	1.00[EUR][1000 genomes]
rs6580540	1.00[EUR][1000 genomes]
rs6580541	1.00[EUR][1000 genomes]
rs6868404	1.00[EUR][1000 genomes]
rs6875394	1.00[EUR][1000 genomes]
rs6879289	1.00[EUR][1000 genomes]
rs6881998	1.00[EUR][1000 genomes]
rs6891158	1.00[EUR][1000 genomes]
rs6897251	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73271118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276475	1.00[EUR][1000 genomes]
rs73278528	1.00[EUR][1000 genomes]
rs73278535	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73795067	1.00[EUR][1000 genomes]
rs73795069	1.00[EUR][1000 genomes]
rs73797311	1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs7708548	1.00[EUR][1000 genomes]
rs7709265	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:147502400-147526000	Weak transcription	Hela-S3	cervix
3	chr5:147507400-147521000	Weak transcription	Esophagus	oesophagus
4	chr5:147513600-147522200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:147513600-147526200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:147515200-147525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:147515400-147520800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:147515400-147524400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:147515600-147520800	Weak transcription	Stomach Mucosa	stomach
10	chr5:147515800-147525200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:147517200-147525400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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