Variant report

Variant	rs1422984
Chromosome Location	chr5:147412360-147412361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037068	1.00[EUR][1000 genomes]
rs10037369	1.00[EUR][1000 genomes]
rs10037673	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10038266	1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10042754	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10054271	1.00[EUR][1000 genomes]
rs10055303	1.00[EUR][1000 genomes]
rs10056490	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10057434	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	0.84[ASW][hapmap];1.00[EUR][1000 genomes]
rs10063124	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10064440	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10065895	1.00[EUR][1000 genomes]
rs10067543	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10067929	1.00[EUR][1000 genomes]
rs10069389	1.00[EUR][1000 genomes]
rs10070673	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072814	1.00[EUR][1000 genomes]
rs10074421	1.00[EUR][1000 genomes]
rs10075087	1.00[EUR][1000 genomes]
rs10075879	1.00[EUR][1000 genomes]
rs10076722	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10077349	1.00[EUR][1000 genomes]
rs10078401	1.00[EUR][1000 genomes]
rs10079585	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477356	1.00[EUR][1000 genomes]
rs10477361	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs10515598	1.00[EUR][1000 genomes]
rs10515604	1.00[EUR][1000 genomes]
rs11168017	0.86[YRI][hapmap]
rs11952390	1.00[EUR][1000 genomes]
rs11956316	1.00[EUR][1000 genomes]
rs11960859	1.00[EUR][1000 genomes]
rs12659499	1.00[EUR][1000 genomes]
rs13357089	1.00[EUR][1000 genomes]
rs13436290	1.00[EUR][1000 genomes]
rs13436617	1.00[EUR][1000 genomes]
rs13436756	1.00[EUR][1000 genomes]
rs13436799	1.00[EUR][1000 genomes]
rs13436800	1.00[EUR][1000 genomes]
rs17096677	1.00[EUR][1000 genomes]
rs17107495	1.00[EUR][1000 genomes]
rs17107570	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs28408445	1.00[EUR][1000 genomes]
rs28433470	1.00[EUR][1000 genomes]
rs28449960	1.00[EUR][1000 genomes]
rs28545137	1.00[EUR][1000 genomes]
rs28573919	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28631785	1.00[EUR][1000 genomes]
rs28732977	1.00[EUR][1000 genomes]
rs28753859	1.00[EUR][1000 genomes]
rs2895729	0.90[YRI][hapmap]
rs4502809	1.00[EUR][1000 genomes]
rs4529179	1.00[EUR][1000 genomes]
rs4994723	1.00[EUR][1000 genomes]
rs56121007	1.00[EUR][1000 genomes]
rs57186409	1.00[EUR][1000 genomes]
rs57804951	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58069263	1.00[EUR][1000 genomes]
rs58257443	1.00[EUR][1000 genomes]
rs58888156	1.00[EUR][1000 genomes]
rs59746579	1.00[EUR][1000 genomes]
rs60076377	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60206159	1.00[EUR][1000 genomes]
rs60937504	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs66850376	0.85[AFR][1000 genomes]
rs67918261	0.85[AFR][1000 genomes]
rs6868404	1.00[EUR][1000 genomes]
rs6875394	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73265206	1.00[EUR][1000 genomes]
rs73265249	1.00[EUR][1000 genomes]
rs73265266	1.00[EUR][1000 genomes]
rs73265280	1.00[EUR][1000 genomes]
rs73265300	1.00[EUR][1000 genomes]
rs73265302	1.00[EUR][1000 genomes]
rs73271118	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73797307	1.00[EUR][1000 genomes]
rs73797311	1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs9325051	1.00[EUR][1000 genomes]
rs9325053	1.00[EUR][1000 genomes]
rs9325054	1.00[EUR][1000 genomes]
rs9325055	1.00[EUR][1000 genomes]
rs9325056	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933016	chr5:147395849-147453701	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1422984	C16orf92	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147411600-147414200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:147411600-147414400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:147412200-147412800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links