Variant report

Variant	rs9325054
Chromosome Location	chr5:147304776-147304777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037068	1.00[EUR][1000 genomes]
rs10037369	1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042754	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[EUR][1000 genomes]
rs10054271	1.00[EUR][1000 genomes]
rs10055303	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10057434	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10065895	1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069269	0.84[AMR][1000 genomes]
rs10069389	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070673	1.00[EUR][1000 genomes]
rs10072814	1.00[EUR][1000 genomes]
rs10074421	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075087	1.00[EUR][1000 genomes]
rs10075879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076722	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10077349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10078401	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079585	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477356	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs10515598	1.00[EUR][1000 genomes]
rs10515604	1.00[EUR][1000 genomes]
rs11952390	1.00[EUR][1000 genomes]
rs11956316	1.00[EUR][1000 genomes]
rs11960859	1.00[EUR][1000 genomes]
rs13357089	1.00[EUR][1000 genomes]
rs13436290	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13436617	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13436756	1.00[EUR][1000 genomes]
rs13436799	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13436800	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs17096677	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107495	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107570	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs28433470	1.00[EUR][1000 genomes]
rs28449960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28545137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs28631785	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28732977	1.00[EUR][1000 genomes]
rs28753859	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4502809	1.00[EUR][1000 genomes]
rs4529179	1.00[EUR][1000 genomes]
rs4994723	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121007	1.00[EUR][1000 genomes]
rs57186409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57804951	1.00[EUR][1000 genomes]
rs58069263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58257443	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60076377	1.00[EUR][1000 genomes]
rs60206159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60937504	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs73265206	1.00[EUR][1000 genomes]
rs73265249	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73265266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73265280	1.00[EUR][1000 genomes]
rs73265300	1.00[EUR][1000 genomes]
rs73265302	1.00[EUR][1000 genomes]
rs73271118	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73797307	1.00[EUR][1000 genomes]
rs73797311	1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs9325051	1.00[EUR][1000 genomes]
rs9325053	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9325055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9325056	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv523147	chr5:147302214-147309468	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147301200-147306600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:147302200-147306600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:147304400-147304800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:147304600-147305000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:147304600-147305000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:147304600-147305000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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