Variant report

Variant	rs10515598
Chromosome Location	chr5:147332895-147332896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037068	1.00[EUR][1000 genomes]
rs10037369	1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038266	1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042754	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[EUR][1000 genomes]
rs10054271	1.00[EUR][1000 genomes]
rs10055303	1.00[EUR][1000 genomes]
rs10056490	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10057434	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10065895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067929	1.00[EUR][1000 genomes]
rs10069389	1.00[EUR][1000 genomes]
rs10070673	1.00[EUR][1000 genomes]
rs10072814	1.00[EUR][1000 genomes]
rs10074421	1.00[EUR][1000 genomes]
rs10075087	1.00[EUR][1000 genomes]
rs10075879	1.00[EUR][1000 genomes]
rs10076722	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10077349	1.00[EUR][1000 genomes]
rs10078401	1.00[EUR][1000 genomes]
rs10079585	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477356	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs10515604	1.00[EUR][1000 genomes]
rs11952390	1.00[EUR][1000 genomes]
rs11956316	1.00[EUR][1000 genomes]
rs11960859	1.00[EUR][1000 genomes]
rs12171507	1.00[MEX][hapmap]
rs13357089	1.00[EUR][1000 genomes]
rs13360221	1.00[MEX][hapmap]
rs13436290	1.00[EUR][1000 genomes]
rs13436617	1.00[EUR][1000 genomes]
rs13436756	1.00[EUR][1000 genomes]
rs13436799	1.00[EUR][1000 genomes]
rs13436800	1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs1422999	1.00[MEX][hapmap]
rs17096677	1.00[EUR][1000 genomes]
rs17107495	1.00[EUR][1000 genomes]
rs17107570	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs28408445	1.00[EUR][1000 genomes]
rs28433470	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28449960	1.00[EUR][1000 genomes]
rs28545137	1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs28631785	1.00[EUR][1000 genomes]
rs28732977	1.00[EUR][1000 genomes]
rs28753859	1.00[EUR][1000 genomes]
rs4502809	1.00[EUR][1000 genomes]
rs4529179	1.00[EUR][1000 genomes]
rs4994723	1.00[EUR][1000 genomes]
rs56121007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57186409	1.00[EUR][1000 genomes]
rs57804951	1.00[EUR][1000 genomes]
rs58069263	1.00[EUR][1000 genomes]
rs58257443	1.00[EUR][1000 genomes]
rs58888156	1.00[EUR][1000 genomes]
rs60076377	1.00[EUR][1000 genomes]
rs60206159	1.00[EUR][1000 genomes]
rs60937504	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73265206	1.00[EUR][1000 genomes]
rs73265249	1.00[EUR][1000 genomes]
rs73265266	1.00[EUR][1000 genomes]
rs73265280	1.00[EUR][1000 genomes]
rs73265300	1.00[EUR][1000 genomes]
rs73265302	1.00[EUR][1000 genomes]
rs73271118	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73797307	1.00[EUR][1000 genomes]
rs73797311	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs9325051	1.00[EUR][1000 genomes]
rs9325053	1.00[EUR][1000 genomes]
rs9325054	1.00[EUR][1000 genomes]
rs9325055	1.00[EUR][1000 genomes]
rs9325056	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv16820	chr5:147320290-147337996	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3692876	chr5:147326902-147337164	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2760927	chr5:147327342-147343763	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv441968	chr5:147327346-147337913	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv514328	chr5:147329263-147337727	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147326600-147345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:147327000-147343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:147327200-147343400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:147327400-147335400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:147327400-147335400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:147327600-147335200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:147328400-147334800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:147328400-147337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:147328400-147343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:147330200-147335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:147330200-147335600	Weak transcription	Hela-S3	cervix
12	chr5:147331800-147343000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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