Variant report

Variant	rs11952390
Chromosome Location	chr5:147314763-147314764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:147266116..147267738-chr5:147314317..147315126,9	MCF-7	breast:
2	chr5:147266087..147267964-chr5:147313920..147315297,16	MCF-7	breast:
3	chr5:147236854..147237741-chr5:147314334..147315282,8	MCF-7	breast:
4	chr5:147236518..147237633-chr5:147314355..147315282,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248362	Chromatin interaction
ENSG00000251320	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037068	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10037369	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038266	1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[EUR][1000 genomes]
rs10054271	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10055303	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10057434	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10065895	1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067929	1.00[EUR][1000 genomes]
rs10069389	1.00[EUR][1000 genomes]
rs10070673	1.00[EUR][1000 genomes]
rs10072814	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074421	1.00[EUR][1000 genomes]
rs10075087	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075879	1.00[EUR][1000 genomes]
rs10076722	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10077349	1.00[EUR][1000 genomes]
rs10078401	1.00[EUR][1000 genomes]
rs10079585	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477356	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs10515598	1.00[EUR][1000 genomes]
rs10515604	1.00[EUR][1000 genomes]
rs11956316	1.00[EUR][1000 genomes]
rs11960859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13357089	1.00[EUR][1000 genomes]
rs13436290	1.00[EUR][1000 genomes]
rs13436617	1.00[EUR][1000 genomes]
rs13436756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13436799	1.00[EUR][1000 genomes]
rs13436800	1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs17096677	1.00[EUR][1000 genomes]
rs17107495	1.00[EUR][1000 genomes]
rs17107570	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs28408445	1.00[EUR][1000 genomes]
rs28433470	1.00[EUR][1000 genomes]
rs28449960	1.00[EUR][1000 genomes]
rs28545137	1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs28631785	1.00[EUR][1000 genomes]
rs28732977	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28753859	1.00[EUR][1000 genomes]
rs4502809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4529179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4994723	1.00[EUR][1000 genomes]
rs56121007	1.00[EUR][1000 genomes]
rs57186409	1.00[EUR][1000 genomes]
rs57804951	1.00[EUR][1000 genomes]
rs58069263	1.00[EUR][1000 genomes]
rs58257443	1.00[EUR][1000 genomes]
rs60076377	1.00[EUR][1000 genomes]
rs60206159	1.00[EUR][1000 genomes]
rs60937504	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs73265206	1.00[EUR][1000 genomes]
rs73265249	1.00[EUR][1000 genomes]
rs73265266	1.00[EUR][1000 genomes]
rs73265280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73265300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73265302	1.00[EUR][1000 genomes]
rs73271118	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73797307	1.00[EUR][1000 genomes]
rs73797311	1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs9325051	1.00[EUR][1000 genomes]
rs9325053	1.00[EUR][1000 genomes]
rs9325054	1.00[EUR][1000 genomes]
rs9325055	1.00[EUR][1000 genomes]
rs9325056	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147313200-147318800	Weak transcription	Esophagus	oesophagus
2	chr5:147314400-147314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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