Variant report

Variant	rs58888156
Chromosome Location	chr5:147510812-147510813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038266	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042118	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10052920	1.00[EUR][1000 genomes]
rs10056490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10065895	1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067605	1.00[EUR][1000 genomes]
rs10070673	1.00[EUR][1000 genomes]
rs10074211	1.00[EUR][1000 genomes]
rs10075715	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515598	1.00[EUR][1000 genomes]
rs10515604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109558	1.00[EUR][1000 genomes]
rs12659499	1.00[EUR][1000 genomes]
rs13355381	1.00[EUR][1000 genomes]
rs13362082	1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs17107570	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs1835913	1.00[EUR][1000 genomes]
rs1835914	1.00[EUR][1000 genomes]
rs2288779	1.00[EUR][1000 genomes]
rs2400501	1.00[EUR][1000 genomes]
rs28408445	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433470	1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs56121007	1.00[EUR][1000 genomes]
rs56306866	1.00[EUR][1000 genomes]
rs57804951	1.00[EUR][1000 genomes]
rs59746579	1.00[EUR][1000 genomes]
rs60076377	1.00[EUR][1000 genomes]
rs61331507	1.00[EUR][1000 genomes]
rs61618834	1.00[EUR][1000 genomes]
rs6580540	1.00[EUR][1000 genomes]
rs6580541	1.00[EUR][1000 genomes]
rs6868404	1.00[EUR][1000 genomes]
rs6875394	1.00[EUR][1000 genomes]
rs6879289	1.00[EUR][1000 genomes]
rs6881998	1.00[EUR][1000 genomes]
rs6891158	1.00[EUR][1000 genomes]
rs6897251	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73271118	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276475	1.00[EUR][1000 genomes]
rs73278528	1.00[EUR][1000 genomes]
rs73278535	1.00[EUR][1000 genomes]
rs73794605	1.00[EUR][1000 genomes]
rs73795067	1.00[EUR][1000 genomes]
rs73795069	1.00[EUR][1000 genomes]
rs73797311	1.00[EUR][1000 genomes]
rs7700644	1.00[EUR][1000 genomes]
rs7708548	1.00[EUR][1000 genomes]
rs7709265	1.00[EUR][1000 genomes]
rs9325059	1.00[EUR][1000 genomes]
rs9325060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933726	chr5:147506754-147510995	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv933612	chr5:147506754-147511148	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:147481400-147513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:147486800-147515000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:147498800-147513000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:147500200-147513200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:147500400-147516000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:147502400-147526000	Weak transcription	Hela-S3	cervix
11	chr5:147503200-147512000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:147505400-147514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:147507400-147521000	Weak transcription	Esophagus	oesophagus
14	chr5:147507800-147512000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:147508600-147515000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:147509200-147518400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:147510200-147511000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr5:147510400-147512000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr5:147510800-147511000	Enhancers	Stomach Mucosa	stomach

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