Variant report

Variant	rs12659499
Chromosome Location	chr5:147587334-147587335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147585588..147588520-chr5:147590065..147592405,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10036463	1.00[EUR][1000 genomes]
rs10037673	1.00[EUR][1000 genomes]
rs10038266	1.00[EUR][1000 genomes]
rs10038968	1.00[EUR][1000 genomes]
rs10041966	1.00[EUR][1000 genomes]
rs10042118	1.00[EUR][1000 genomes]
rs10044155	1.00[EUR][1000 genomes]
rs10056490	1.00[EUR][1000 genomes]
rs10056793	1.00[EUR][1000 genomes]
rs10060456	1.00[EUR][1000 genomes]
rs10062167	1.00[EUR][1000 genomes]
rs10063124	1.00[EUR][1000 genomes]
rs10063154	1.00[EUR][1000 genomes]
rs10064440	1.00[EUR][1000 genomes]
rs10067543	1.00[EUR][1000 genomes]
rs10067605	1.00[EUR][1000 genomes]
rs10074211	1.00[EUR][1000 genomes]
rs10075715	1.00[EUR][1000 genomes]
rs10076759	1.00[EUR][1000 genomes]
rs10079907	1.00[EUR][1000 genomes]
rs10477361	1.00[EUR][1000 genomes]
rs10477362	1.00[EUR][1000 genomes]
rs10515604	1.00[EUR][1000 genomes]
rs12109558	1.00[EUR][1000 genomes]
rs13355381	1.00[EUR][1000 genomes]
rs13355813	1.00[EUR][1000 genomes]
rs13362082	1.00[EUR][1000 genomes]
rs1422984	1.00[EUR][1000 genomes]
rs17107730	1.00[EUR][1000 genomes]
rs17107741	1.00[EUR][1000 genomes]
rs1835913	1.00[EUR][1000 genomes]
rs1835914	1.00[EUR][1000 genomes]
rs2288779	1.00[EUR][1000 genomes]
rs2400501	1.00[EUR][1000 genomes]
rs28408445	1.00[EUR][1000 genomes]
rs28573919	1.00[EUR][1000 genomes]
rs56306866	1.00[EUR][1000 genomes]
rs58888156	1.00[EUR][1000 genomes]
rs59746579	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61618834	1.00[EUR][1000 genomes]
rs6580540	1.00[EUR][1000 genomes]
rs6580541	1.00[EUR][1000 genomes]
rs6868404	1.00[EUR][1000 genomes]
rs6875394	1.00[EUR][1000 genomes]
rs6879289	1.00[EUR][1000 genomes]
rs6881998	1.00[EUR][1000 genomes]
rs6891158	1.00[EUR][1000 genomes]
rs6897251	1.00[EUR][1000 genomes]
rs6898139	1.00[EUR][1000 genomes]
rs73271118	1.00[EUR][1000 genomes]
rs73276475	1.00[EUR][1000 genomes]
rs73278528	1.00[EUR][1000 genomes]
rs73278535	1.00[EUR][1000 genomes]
rs73795067	1.00[EUR][1000 genomes]
rs73795069	1.00[EUR][1000 genomes]
rs7708548	1.00[EUR][1000 genomes]
rs7709265	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147584600-147589000	Enhancers	NHEK	skin
2	chr5:147584800-147589600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:147585400-147587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:147585400-147587600	Weak transcription	HMEC	breast
5	chr5:147585600-147587600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:147585600-147589200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:147585800-147588200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:147586000-147588800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:147586400-147588800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:147586600-147587600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:147586600-147589400	Enhancers	Stomach Mucosa	stomach
12	chr5:147587000-147587400	Weak transcription	Adipose Nuclei	Adipose
13	chr5:147587000-147587400	Enhancers	Gastric	stomach

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