Variant report
| Variant | rs73266460 |
|---|---|
| Chromosome Location | chr5:147859939-147859940 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:147823649..147825335-chr5:147857727..147860648,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10036018 | 1.00[EUR][1000 genomes] |
| rs10038033 | 1.00[EUR][1000 genomes] |
| rs10042118 | 1.00[EUR][1000 genomes] |
| rs10053544 | 1.00[EUR][1000 genomes] |
| rs10077951 | 1.00[EUR][1000 genomes] |
| rs12109558 | 1.00[EUR][1000 genomes] |
| rs13355381 | 1.00[EUR][1000 genomes] |
| rs13355813 | 1.00[EUR][1000 genomes] |
| rs13362082 | 1.00[EUR][1000 genomes] |
| rs1835913 | 1.00[EUR][1000 genomes] |
| rs1835914 | 1.00[EUR][1000 genomes] |
| rs2288779 | 1.00[EUR][1000 genomes] |
| rs41381548 | 1.00[EUR][1000 genomes] |
| rs56306866 | 1.00[EUR][1000 genomes] |
| rs6580541 | 1.00[EUR][1000 genomes] |
| rs6871631 | 1.00[EUR][1000 genomes] |
| rs6878503 | 1.00[EUR][1000 genomes] |
| rs6879119 | 1.00[EUR][1000 genomes] |
| rs6879289 | 1.00[EUR][1000 genomes] |
| rs6881998 | 1.00[EUR][1000 genomes] |
| rs6883576 | 1.00[EUR][1000 genomes] |
| rs6891158 | 1.00[EUR][1000 genomes] |
| rs73278528 | 1.00[EUR][1000 genomes] |
| rs73278535 | 1.00[EUR][1000 genomes] |
| rs73795067 | 1.00[EUR][1000 genomes] |
| rs73795069 | 1.00[EUR][1000 genomes] |
| rs9325099 | 1.00[EUR][1000 genomes] |
| rs9325100 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830516 | chr5:147801104-147966093 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:147854000-147861200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr5:147859800-147862200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
