Variant report

Variant	rs6580581
Chromosome Location	chr5:148161695-148161696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10055423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072157	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10078988	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10079055	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952301	1.00[AMR][1000 genomes]
rs11953048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955927	1.00[EUR][1000 genomes]
rs11957071	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	1.00[EUR][1000 genomes]
rs11960708	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13360714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs6580571	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580572	0.84[AFR][1000 genomes]
rs6580573	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580577	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864773	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6877622	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883576	1.00[EUR][1000 genomes]
rs6884542	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6885180	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs6898652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7700539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719592	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720203	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7738035	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885585	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs989875	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs989876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148157200-148165800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:148157200-148170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:148157200-148170600	Weak transcription	NHDF-Ad	bronchial
4	chr5:148157600-148166200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:148157600-148167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:148160600-148161800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:148161000-148161800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:148161000-148162000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:148161000-148162000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:148161000-148162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:148161200-148168000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:148161400-148161800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:148161400-148168600	Weak transcription	Esophagus	oesophagus

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