Variant report

Variant	rs11960708
Chromosome Location	chr5:148172984-148172985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:148172266..148175579-chr5:148179136..148183018,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10038886	1.00[EUR][1000 genomes]
rs10055423	1.00[EUR][1000 genomes]
rs10072157	1.00[EUR][1000 genomes]
rs10078988	1.00[EUR][1000 genomes]
rs10079055	1.00[EUR][1000 genomes]
rs10477391	1.00[EUR][1000 genomes]
rs10477392	1.00[EUR][1000 genomes]
rs10477393	1.00[EUR][1000 genomes]
rs11949281	1.00[EUR][1000 genomes]
rs11955927	1.00[EUR][1000 genomes]
rs11957071	1.00[EUR][1000 genomes]
rs11958205	1.00[EUR][1000 genomes]
rs11958415	1.00[EUR][1000 genomes]
rs11960810	1.00[EUR][1000 genomes]
rs13358515	1.00[EUR][1000 genomes]
rs13360245	1.00[EUR][1000 genomes]
rs13360714	1.00[EUR][1000 genomes]
rs13362580	1.00[EUR][1000 genomes]
rs13436102	1.00[EUR][1000 genomes]
rs28385348	1.00[EUR][1000 genomes]
rs35894867	1.00[EUR][1000 genomes]
rs6580574	1.00[EUR][1000 genomes]
rs6580581	1.00[EUR][1000 genomes]
rs6864773	1.00[EUR][1000 genomes]
rs6867121	1.00[EUR][1000 genomes]
rs6883576	1.00[EUR][1000 genomes]
rs6884542	1.00[EUR][1000 genomes]
rs6891709	1.00[EUR][1000 genomes]
rs764416	1.00[EUR][1000 genomes]
rs7704797	1.00[EUR][1000 genomes]
rs7710734	1.00[EUR][1000 genomes]
rs7720203	1.00[EUR][1000 genomes]
rs9885585	1.00[EUR][1000 genomes]
rs989875	1.00[EUR][1000 genomes]
rs989876	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148170000-148175600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:148170200-148173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:148170200-148174800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:148170400-148173400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:148170400-148175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:148170800-148173600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:148170800-148175200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:148170800-148175400	Enhancers	GM12878-XiMat	blood
9	chr5:148171000-148173400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:148171000-148173400	Enhancers	HMEC	breast
11	chr5:148171600-148173000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:148171600-148173200	Weak transcription	Esophagus	oesophagus
13	chr5:148171600-148176200	Weak transcription	Lung	lung
14	chr5:148171800-148173200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:148171800-148176200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:148172000-148178200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:148172200-148173400	Enhancers	K562	blood
18	chr5:148172200-148175800	Enhancers	Osteobl	bone
19	chr5:148172400-148173200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:148172600-148173200	Enhancers	NH-A	brain
21	chr5:148172600-148173600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:148172600-148174400	Enhancers	NHDF-Ad	bronchial
23	chr5:148172800-148173000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:148172800-148173000	Enhancers	HSMM	muscle
25	chr5:148172800-148173600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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