Variant report

Variant	rs10068257
Chromosome Location	chr5:106731525-106731526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10038224	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053294	1.00[EUR][1000 genomes]
rs10058412	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070032	1.00[ASN][1000 genomes]
rs10072838	1.00[ASN][1000 genomes]
rs10075454	1.00[ASN][1000 genomes]
rs11956462	1.00[EUR][1000 genomes]
rs11958371	1.00[EUR][1000 genomes]
rs17159819	1.00[EUR][1000 genomes]
rs17159895	1.00[EUR][1000 genomes]
rs17159897	1.00[ASN][1000 genomes]
rs17159898	1.00[ASN][1000 genomes]
rs17159917	1.00[ASN][1000 genomes]
rs17159926	1.00[EUR][1000 genomes]
rs17159963	1.00[EUR][1000 genomes]
rs17159972	1.00[EUR][1000 genomes]
rs17159988	1.00[EUR][1000 genomes]
rs2113035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106720400-106740800	Weak transcription	Aorta	Aorta
2	chr5:106723600-106732000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:106725200-106733800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:106725600-106732200	Weak transcription	Left Ventricle	heart
5	chr5:106725800-106731800	Weak transcription	Osteobl	bone
6	chr5:106725800-106732000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:106725800-106732000	Weak transcription	Fetal Heart	heart
8	chr5:106725800-106732400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:106725800-106740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:106728400-106732200	Weak transcription	Ovary	ovary
11	chr5:106728400-106732600	Enhancers	A549	lung
12	chr5:106728400-106738200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:106728600-106733600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:106729400-106731600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:106729400-106732400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:106729600-106732800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:106729800-106733000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:106730000-106731600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:106730000-106731600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:106730000-106732400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:106730200-106731600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:106730400-106731800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:106730400-106732200	Enhancers	GM12878-XiMat	blood
24	chr5:106730400-106737200	Weak transcription	Fetal Lung	lung
25	chr5:106730600-106731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:106730600-106731600	Weak transcription	NHDF-Ad	bronchial
27	chr5:106730600-106732000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:106731000-106731600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr5:106731000-106732600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:106731200-106731800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:106731200-106732200	Enhancers	Fetal Kidney	kidney
32	chr5:106731200-106732600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:106731200-106732600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr5:106731200-106733000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:106731400-106731800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr5:106731400-106732200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr5:106731400-106732200	Enhancers	HSMM	muscle
38	chr5:106731400-106732200	Enhancers	NH-A	brain
39	chr5:106731400-106732600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:106731400-106732600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:106731400-106732600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr5:106731400-106732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:106731400-106732600	Enhancers	Cortex derived primary cultured neurospheres	brain

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