Variant report

Variant	rs10070032
Chromosome Location	chr5:106744471-106744472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10038224	1.00[ASN][1000 genomes]
rs10058412	1.00[ASN][1000 genomes]
rs10068257	1.00[ASN][1000 genomes]
rs10072838	1.00[ASN][1000 genomes]
rs10075454	1.00[ASN][1000 genomes]
rs17159897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159898	0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs17159917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2113035	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106732200-106753200	Weak transcription	Fetal Kidney	kidney
2	chr5:106733600-106744800	Weak transcription	Right Ventricle	heart
3	chr5:106738800-106761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:106739000-106751200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:106739000-106754600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:106739000-106758200	Weak transcription	Left Ventricle	heart
7	chr5:106739600-106762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:106740400-106749800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:106740600-106744800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:106740800-106744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:106741000-106744600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:106741000-106758200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:106741200-106749600	Weak transcription	A549	lung
14	chr5:106741200-106751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:106741400-106744800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:106741400-106745000	Weak transcription	NHDF-Ad	bronchial
17	chr5:106741600-106744800	Weak transcription	HMEC	breast
18	chr5:106742000-106753800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:106743000-106746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:106744200-106745000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:106744200-106748000	Weak transcription	Fetal Heart	heart
22	chr5:106744400-106744600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr5:106744400-106745000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:106744400-106745000	Enhancers	GM12878-XiMat	blood
25	chr5:106744400-106745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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