Variant report
Variant | rs10068847 |
---|---|
Chromosome Location | chr5:2091204-2091205 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10039186 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs10039370 | 1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10039392 | 0.83[AFR][1000 genomes] |
rs10041106 | 0.83[EUR][1000 genomes] |
rs10043989 | 0.83[EUR][1000 genomes] |
rs10056211 | 1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10060649 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10062782 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10063808 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10066240 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10066385 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10066597 | 0.85[AFR][1000 genomes] |
rs10067919 | 0.85[AFR][1000 genomes] |
rs10068233 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10068634 | 0.81[AFR][1000 genomes] |
rs10069051 | 0.94[EUR][1000 genomes] |
rs10069104 | 0.94[EUR][1000 genomes] |
rs10070853 | 0.83[EUR][1000 genomes] |
rs10073733 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs10075502 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10428571 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11741616 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11741646 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11745993 | 0.80[CEU][hapmap] |
rs13354874 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13355387 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13357993 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13357995 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13358051 | 0.85[EUR][1000 genomes] |
rs13358958 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs13359444 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13360716 | 0.83[EUR][1000 genomes] |
rs13362263 | 0.94[EUR][1000 genomes] |
rs28702040 | 0.94[EUR][1000 genomes] |
rs57862430 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61659441 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs62327939 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs62329475 | 0.82[EUR][1000 genomes] |
rs62329476 | 0.83[EUR][1000 genomes] |
rs6869000 | 0.81[AFR][1000 genomes] |
rs6869329 | 0.81[AFR][1000 genomes] |
rs73732562 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817407 | chr5:1495354-2191460 | Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 107 gene(s) | inside rSNPs | diseases |
2 | nsv869236 | chr5:1719263-2259100 | Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
3 | nsv915846 | chr5:1891098-2167677 | Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
4 | nsv1026930 | chr5:1898993-2126061 | Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
5 | nsv427705 | chr5:1950467-2115059 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv1032759 | chr5:2044117-2091631 | Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1020211 | chr5:2045699-2104887 | Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:2088200-2097000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |