Variant report

Variant	rs62329476
Chromosome Location	chr5:2098842-2098843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10039186	0.82[EUR][1000 genomes]
rs10039370	0.83[EUR][1000 genomes]
rs10041106	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10043989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056211	0.81[EUR][1000 genomes]
rs10060649	0.83[EUR][1000 genomes]
rs10062782	0.80[EUR][1000 genomes]
rs10063808	0.83[EUR][1000 genomes]
rs10066240	0.83[EUR][1000 genomes]
rs10066385	0.83[EUR][1000 genomes]
rs10068233	0.83[EUR][1000 genomes]
rs10068847	0.83[EUR][1000 genomes]
rs10069051	0.89[EUR][1000 genomes]
rs10069104	0.89[EUR][1000 genomes]
rs10070853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10073733	0.82[EUR][1000 genomes]
rs10075502	0.83[EUR][1000 genomes]
rs10428571	0.89[EUR][1000 genomes]
rs11741616	0.83[EUR][1000 genomes]
rs11741646	0.83[EUR][1000 genomes]
rs13354874	0.89[EUR][1000 genomes]
rs13355387	0.89[EUR][1000 genomes]
rs13357993	0.83[EUR][1000 genomes]
rs13357995	0.83[EUR][1000 genomes]
rs13358051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13358958	0.82[EUR][1000 genomes]
rs13359444	0.89[EUR][1000 genomes]
rs13360716	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13362263	0.89[EUR][1000 genomes]
rs28702040	0.89[EUR][1000 genomes]
rs56028101	0.90[AFR][1000 genomes]
rs56154225	0.90[AFR][1000 genomes]
rs56902203	0.90[AFR][1000 genomes]
rs57862430	0.83[EUR][1000 genomes]
rs58819876	0.92[AFR][1000 genomes]
rs59348511	0.91[AFR][1000 genomes]
rs60007658	0.90[AFR][1000 genomes]
rs61659441	0.82[EUR][1000 genomes]
rs62327939	0.82[EUR][1000 genomes]
rs62329475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62329477	0.92[AFR][1000 genomes]
rs67435868	0.89[AFR][1000 genomes]
rs72710614	0.91[AFR][1000 genomes]
rs73732562	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1020211	chr5:2045699-2104887	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2098200-2101000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links