Variant report

Variant	rs10069403
Chromosome Location	chr5:57019091-57019092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10077005	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10487613	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10487614	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13185580	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs170740	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs183477	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2017201	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2041678	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2191444	0.81[EUR][1000 genomes]
rs2191445	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2191446	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2191448	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2215420	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs229961	0.83[AMR][1000 genomes]
rs230846	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs230853	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs230860	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs230861	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2408846	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2408849	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2898028	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4235474	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4699910	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700214	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6450430	0.81[EUR][1000 genomes]
rs6450431	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6886241	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7726732	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7732108	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7737409	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs917655	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs986101	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs991727	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57012800-57020000	Weak transcription	NHEK	skin
2	chr5:57014400-57020000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57014800-57019400	Weak transcription	NHLF	lung
4	chr5:57015400-57020200	Weak transcription	NHDF-Ad	bronchial
5	chr5:57016000-57020000	Weak transcription	HSMM	muscle
6	chr5:57016600-57020400	Weak transcription	A549	lung
7	chr5:57016600-57021400	Weak transcription	Aorta	Aorta
8	chr5:57016800-57020200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:57016800-57020600	Weak transcription	NH-A	brain
10	chr5:57017000-57020200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57017000-57020600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:57017000-57020800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:57017000-57021400	Weak transcription	HSMMtube	muscle
14	chr5:57017200-57020200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:57017400-57020400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:57017400-57020800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:57018400-57020400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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