Variant report

Variant	rs2191444
Chromosome Location	chr5:57011584-57011585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPBP1-7	chr5:57010573-57012349	l_2923_chr5:56982201-57002577_liver

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10069403	0.81[EUR][1000 genomes]
rs10077005	0.87[EUR][1000 genomes]
rs10461637	0.95[ASN][1000 genomes]
rs10487614	0.82[EUR][1000 genomes]
rs10805498	0.95[ASN][1000 genomes]
rs10940569	0.91[EUR][1000 genomes]
rs10940570	0.90[EUR][1000 genomes]
rs10940576	0.95[ASN][1000 genomes]
rs11738377	0.91[EUR][1000 genomes]
rs11738862	0.90[EUR][1000 genomes]
rs11740506	0.91[EUR][1000 genomes]
rs11742166	0.91[EUR][1000 genomes]
rs11955303	0.95[ASN][1000 genomes]
rs12153161	0.92[EUR][1000 genomes]
rs12523268	0.95[ASN][1000 genomes]
rs12652614	0.92[EUR][1000 genomes]
rs12654403	0.92[ASN][1000 genomes]
rs13161204	0.91[EUR][1000 genomes]
rs13166729	1.00[ASN][1000 genomes]
rs13176491	0.83[ASN][1000 genomes]
rs13177900	0.90[EUR][1000 genomes]
rs13185580	0.87[EUR][1000 genomes]
rs13186318	1.00[ASN][1000 genomes]
rs1476831	0.91[EUR][1000 genomes]
rs1476832	0.91[EUR][1000 genomes]
rs1558367	0.92[ASN][1000 genomes]
rs1860575	0.95[ASN][1000 genomes]
rs2017201	0.88[EUR][1000 genomes]
rs2041401	0.95[ASN][1000 genomes]
rs2041402	0.95[ASN][1000 genomes]
rs2041403	0.95[ASN][1000 genomes]
rs2041678	0.84[EUR][1000 genomes]
rs2191445	0.88[EUR][1000 genomes]
rs2191446	0.88[EUR][1000 genomes]
rs2191447	0.95[ASN][1000 genomes]
rs2191448	0.88[EUR][1000 genomes]
rs2191449	0.91[EUR][1000 genomes]
rs2215418	0.95[ASN][1000 genomes]
rs2215420	0.81[EUR][1000 genomes]
rs2215421	0.90[EUR][1000 genomes]
rs230823	0.90[EUR][1000 genomes]
rs230824	0.90[EUR][1000 genomes]
rs230825	0.90[EUR][1000 genomes]
rs230826	0.90[EUR][1000 genomes]
rs230827	0.89[EUR][1000 genomes]
rs230847	0.91[EUR][1000 genomes]
rs230848	0.91[EUR][1000 genomes]
rs230849	0.91[EUR][1000 genomes]
rs230850	0.91[EUR][1000 genomes]
rs230851	0.91[EUR][1000 genomes]
rs230852	0.91[EUR][1000 genomes]
rs230854	0.91[EUR][1000 genomes]
rs230855	0.91[EUR][1000 genomes]
rs230856	0.91[EUR][1000 genomes]
rs230857	0.92[EUR][1000 genomes]
rs230858	0.92[EUR][1000 genomes]
rs230859	0.92[EUR][1000 genomes]
rs230860	0.81[EUR][1000 genomes]
rs230861	0.81[EUR][1000 genomes]
rs2408846	0.88[EUR][1000 genomes]
rs2408848	0.92[ASN][1000 genomes]
rs2408849	0.84[EUR][1000 genomes]
rs2898028	0.84[EUR][1000 genomes]
rs4141128	0.90[EUR][1000 genomes]
rs4235474	0.81[EUR][1000 genomes]
rs4699909	0.91[EUR][1000 genomes]
rs4699910	0.87[EUR][1000 genomes]
rs4700210	0.92[EUR][1000 genomes]
rs4700211	0.91[EUR][1000 genomes]
rs4700214	0.88[EUR][1000 genomes]
rs4700215	0.95[ASN][1000 genomes]
rs6450431	0.87[EUR][1000 genomes]
rs6860385	0.86[ASN][1000 genomes]
rs6872973	0.95[ASN][1000 genomes]
rs6885246	1.00[ASN][1000 genomes]
rs702695	0.91[EUR][1000 genomes]
rs702696	0.91[EUR][1000 genomes]
rs7711714	0.95[ASN][1000 genomes]
rs7714534	0.91[EUR][1000 genomes]
rs7719947	0.91[EUR][1000 genomes]
rs7725863	0.95[ASN][1000 genomes]
rs7726116	0.95[ASN][1000 genomes]
rs7732108	0.88[EUR][1000 genomes]
rs7737409	0.88[EUR][1000 genomes]
rs854137	0.91[EUR][1000 genomes]
rs887503	0.91[EUR][1000 genomes]
rs917655	0.81[EUR][1000 genomes]
rs978225	0.95[ASN][1000 genomes]
rs986101	0.88[EUR][1000 genomes]
rs991727	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57001000-57012400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57006600-57013400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:57007800-57013600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:57008000-57012400	Weak transcription	A549	lung
5	chr5:57009800-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57009800-57016400	Weak transcription	Aorta	Aorta

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