Variant report

Variant	rs10070119
Chromosome Location	chr5:74603955-74603956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10942734	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11957260	0.89[EUR][1000 genomes]
rs1423527	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2112653	0.86[ASN][1000 genomes]
rs2126736	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2335418	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4703667	0.81[EUR][1000 genomes]
rs4704200	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4704202	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6871667	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6892023	0.88[EUR][1000 genomes]
rs7702895	0.87[EUR][1000 genomes]
rs7722186	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv968211	chr5:74596362-74604577	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74601200-74604000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr5:74602400-74606400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:74602800-74607400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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