Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10078014	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12515174	0.82[ASN][1000 genomes]
rs12520021	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12522411	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1422003	0.83[ASN][1000 genomes]
rs17473588	0.85[ASN][1000 genomes]
rs4645374	0.93[ASN][1000 genomes]
rs57400924	0.85[ASN][1000 genomes]
rs60496657	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6864796	0.85[ASN][1000 genomes]
rs6866668	0.93[ASN][1000 genomes]
rs6877495	0.85[ASN][1000 genomes]
rs6881141	0.85[ASN][1000 genomes]
rs6899020	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7700949	0.93[ASN][1000 genomes]
rs7715416	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7716124	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718897	0.92[ASN][1000 genomes]
rs7720237	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7727900	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4955	chr5:108577946-108611852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv508375	chr5:108587628-108624046	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763481	chr5:108605390-108693696	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108601800-108615000	Weak transcription	Pancreas	Pancrea

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