Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108572770..108575562-chr5:108575824..108578340,3	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10070978	0.85[ASN][1000 genomes]
rs10078014	0.84[ASN][1000 genomes]
rs11743213	0.85[EUR][1000 genomes]
rs12515174	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12520021	0.92[ASN][1000 genomes]
rs12522058	0.82[ASN][1000 genomes]
rs12522411	0.92[ASN][1000 genomes]
rs1363214	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1422003	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17473588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473831	0.86[EUR][1000 genomes]
rs4346815	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4645374	0.92[ASN][1000 genomes]
rs57400924	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60496657	0.92[ASN][1000 genomes]
rs62376831	0.84[EUR][1000 genomes]
rs62376832	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6864796	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866668	0.92[ASN][1000 genomes]
rs6877495	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881141	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884332	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899020	0.92[ASN][1000 genomes]
rs7700949	0.92[ASN][1000 genomes]
rs7715416	0.88[ASN][1000 genomes]
rs7716124	0.85[ASN][1000 genomes]
rs7718897	0.90[ASN][1000 genomes]
rs7720237	0.92[ASN][1000 genomes]
rs9968753	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108573200-108580800	Weak transcription	Aorta	Aorta
2	chr5:108573200-108582200	Weak transcription	Liver	Liver
3	chr5:108574600-108576400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:108574800-108577200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:108575600-108581800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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