Variant report

Variant	rs10071028
Chromosome Location	chr5:108442403-108442404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108441092..108442647-chr5:108444693..108446908,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10043497	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055459	0.82[EUR][1000 genomes]
rs1036213	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10477433	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11956354	0.84[EUR][1000 genomes]
rs13359743	0.84[EUR][1000 genomes]
rs28874995	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72792518	1.00[ASN][1000 genomes]
rs72796550	1.00[ASN][1000 genomes]
rs72796552	1.00[ASN][1000 genomes]
rs72796559	1.00[ASN][1000 genomes]
rs72796566	1.00[ASN][1000 genomes]
rs7709487	1.00[ASN][1000 genomes]
rs9885519	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
2	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:108441200-108442600	Enhancers	HSMMtube	muscle
4	chr5:108441200-108442800	Enhancers	HSMM	muscle
5	chr5:108441400-108442600	Enhancers	Brain Germinal Matrix	brain
6	chr5:108441400-108442800	Enhancers	Fetal Lung	lung
7	chr5:108441400-108445400	Enhancers	Fetal Heart	heart
8	chr5:108441600-108447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:108441600-108455600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108441800-108442800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:108441800-108455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:108442000-108442600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:108442000-108442600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:108442000-108442800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:108442000-108442800	Enhancers	Osteobl	bone
16	chr5:108442000-108443000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:108442000-108443000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:108442000-108443200	Enhancers	NHDF-Ad	bronchial
19	chr5:108442000-108445000	Weak transcription	Brain Anterior Caudate	brain
20	chr5:108442000-108446800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:108442200-108443000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:108442200-108444200	Enhancers	HUVEC	blood vessel
24	chr5:108442400-108449000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links