Variant report

Variant	rs13359743
Chromosome Location	chr5:108526087-108526088
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108524535..108526775-chr5:108529548..108531375,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10043235	1.00[JPT][hapmap]
rs10043497	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10051367	1.00[YRI][hapmap]
rs10051556	1.00[YRI][hapmap]
rs10055459	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066363	1.00[YRI][hapmap]
rs10071028	0.84[EUR][1000 genomes]
rs1036213	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10477433	0.81[EUR][1000 genomes]
rs10477943	1.00[YRI][hapmap]
rs10515398	1.00[JPT][hapmap]
rs11956354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17450296	1.00[JPT][hapmap]
rs28874995	0.81[EUR][1000 genomes]
rs4476773	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61479828	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709487	1.00[JPT][hapmap]
rs7719964	1.00[YRI][hapmap]
rs9885519	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1792067	chr5:108521224-108542526	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
2	chr5:108496000-108532800	Weak transcription	Ovary	ovary
3	chr5:108500200-108527000	Weak transcription	HSMMtube	muscle
4	chr5:108503200-108526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:108503600-108526200	Weak transcription	Fetal Heart	heart
6	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
7	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
8	chr5:108513800-108529600	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:108515200-108527000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:108517200-108533000	Weak transcription	Fetal Kidney	kidney
11	chr5:108517400-108527600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:108518800-108526400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:108519200-108526200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:108520000-108526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:108520200-108527200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:108520400-108527000	Weak transcription	Small Intestine	intestine
17	chr5:108520600-108526400	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:108520600-108526800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:108520600-108526800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:108520600-108530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:108520800-108527600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:108521200-108528400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:108521400-108528200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:108521600-108527000	Weak transcription	NH-A	brain
25	chr5:108521800-108526400	Weak transcription	HUVEC	blood vessel
26	chr5:108522200-108527000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:108522200-108529400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:108522400-108526400	Weak transcription	NHEK	skin
29	chr5:108522600-108527000	Weak transcription	HMEC	breast
30	chr5:108522600-108538000	Weak transcription	Aorta	Aorta
31	chr5:108522800-108527200	Weak transcription	Fetal Brain Female	brain
32	chr5:108523000-108526800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:108523200-108527000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:108523600-108527000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr5:108523800-108526200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:108523800-108526600	Weak transcription	NHDF-Ad	bronchial
37	chr5:108523800-108526800	Weak transcription	GM12878-XiMat	blood
38	chr5:108523800-108527000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:108523800-108527000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:108523800-108527200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr5:108523800-108527200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:108523800-108529600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:108523800-108531600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:108524000-108531200	Weak transcription	Primary T cells from cord blood	blood
45	chr5:108524000-108531800	Weak transcription	Fetal Stomach	stomach
46	chr5:108524200-108526600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:108524200-108527000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr5:108524200-108528600	Weak transcription	Lung	lung
49	chr5:108524400-108526200	Weak transcription	K562	blood
50	chr5:108524400-108526600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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