Variant report

Variant	rs10071397
Chromosome Location	chr5:124359540-124359541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13185366	0.83[ASN][1000 genomes]
rs28398972	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34572370	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35270378	0.83[ASN][1000 genomes]
rs36115385	0.86[ASN][1000 genomes]
rs6869617	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124354000-124361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:124359000-124360600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:124359000-124362400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:124359200-124360000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124359200-124360000	Enhancers	NHDF-Ad	bronchial
6	chr5:124359400-124360000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links