Variant report

Variant	rs35270378
Chromosome Location	chr5:124347885-124347886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10071397	0.83[ASN][1000 genomes]
rs13185366	0.98[ASN][1000 genomes]
rs36115385	0.97[ASN][1000 genomes]
rs4472259	0.92[ASN][1000 genomes]
rs6890548	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124323400-124348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124342400-124348600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:124345000-124348600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:124346000-124349200	Enhancers	Pancreas	Pancrea
5	chr5:124346400-124348600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:124346400-124350200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:124346600-124348600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:124346800-124348000	Enhancers	Dnd41	blood
9	chr5:124346800-124348600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:124346800-124349000	Enhancers	HepG2	liver
11	chr5:124346800-124349200	Enhancers	Fetal Heart	heart
12	chr5:124346800-124352000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:124346800-124352200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:124347000-124349000	Enhancers	Stomach Mucosa	stomach
15	chr5:124347000-124349200	Enhancers	Primary B cells from peripheral blood	blood
16	chr5:124347200-124348400	Weak transcription	Fetal Intestine Small	intestine
17	chr5:124347200-124349200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:124347400-124348600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:124347400-124349200	Enhancers	Liver	Liver
20	chr5:124347600-124348600	Enhancers	Primary B cells from cord blood	blood
21	chr5:124347600-124348600	Enhancers	A549	lung
22	chr5:124347600-124349200	Enhancers	Fetal Intestine Large	intestine
23	chr5:124347800-124348600	Weak transcription	Fetal Kidney	kidney
24	chr5:124347800-124349200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:124347800-124353400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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