Variant report

Variant	rs10072638
Chromosome Location	chr5:128230754-128230755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10036270	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10050439	1.00[ASN][1000 genomes]
rs10052566	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10058629	0.93[ASN][1000 genomes]
rs10065480	0.88[CEU][hapmap]
rs10066082	0.93[ASN][1000 genomes]
rs10068104	1.00[ASN][1000 genomes]
rs10071048	0.93[ASN][1000 genomes]
rs10071050	0.93[ASN][1000 genomes]
rs10071939	0.81[AMR][1000 genomes]
rs10077456	1.00[ASN][1000 genomes]
rs10079808	1.00[ASN][1000 genomes]
rs10477690	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10478827	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11740497	0.83[CEU][hapmap]
rs11743701	0.88[CEU][hapmap]
rs11749027	0.87[CEU][hapmap]
rs13156417	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13356389	1.00[ASN][1000 genomes]
rs13358000	1.00[ASN][1000 genomes]
rs13359335	0.81[AMR][1000 genomes]
rs13360809	1.00[ASN][1000 genomes]
rs13362019	1.00[ASN][1000 genomes]
rs13436689	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1363169	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1363170	1.00[ASN][1000 genomes]
rs1421889	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17616306	1.00[ASN][1000 genomes]
rs17617241	0.91[CEU][hapmap]
rs17617329	0.91[CEU][hapmap]
rs17678073	0.93[ASN][1000 genomes]
rs17678190	1.00[ASN][1000 genomes]
rs17679250	0.88[CEU][hapmap]
rs1812392	0.90[ASN][1000 genomes]
rs2214369	0.93[ASN][1000 genomes]
rs28548714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28548934	1.00[ASN][1000 genomes]
rs35791995	0.82[AMR][1000 genomes]
rs3851463	0.88[CEU][hapmap]
rs3886286	0.87[CEU][hapmap]
rs4469239	1.00[ASN][1000 genomes]
rs62391242	0.93[ASN][1000 genomes]
rs62393262	0.87[ASN][1000 genomes]
rs62393273	1.00[ASN][1000 genomes]
rs62393274	1.00[ASN][1000 genomes]
rs62393275	1.00[ASN][1000 genomes]
rs6595867	0.95[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6860974	0.93[ASN][1000 genomes]
rs6863819	0.80[AMR][1000 genomes]
rs6867677	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6873224	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6873372	0.96[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6880855	0.96[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71587995	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789204	0.93[ASN][1000 genomes]
rs72789238	1.00[ASN][1000 genomes]
rs72789247	1.00[ASN][1000 genomes]
rs7712212	1.00[ASN][1000 genomes]
rs7712497	1.00[ASN][1000 genomes]
rs7716412	1.00[ASN][1000 genomes]
rs7723679	1.00[ASN][1000 genomes]
rs7723683	1.00[ASN][1000 genomes]
rs7725037	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7730969	0.91[CEU][hapmap]
rs7735034	0.88[CEU][hapmap]
rs9285913	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9327497	1.00[ASN][1000 genomes]
rs9327500	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9327503	0.80[AMR][1000 genomes]
rs9686953	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128230000-128231600	Enhancers	HUVEC	blood vessel

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