Variant report

Variant	rs6873224
Chromosome Location	chr5:128262905-128262906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036270	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038006	0.81[EUR][1000 genomes]
rs10040181	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10052566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065480	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10071939	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072638	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10477690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478827	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740497	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11742560	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11743701	0.84[AMR][1000 genomes]
rs11749027	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13156417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359335	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13436689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421889	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17617241	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17617329	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17679250	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28548714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35791995	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3851463	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3886286	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3886288	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6595867	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863819	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6867677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873372	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877556	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6880855	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71587995	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7725037	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730969	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7735034	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9285913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327500	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327503	0.88[AMR][1000 genomes]
rs9686953	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv823219	chr5:128261719-128263712	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128260200-128264800	Enhancers	Fetal Heart	heart
2	chr5:128260400-128264600	Weak transcription	Right Ventricle	heart
3	chr5:128261800-128263200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:128261800-128265200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:128262400-128264800	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:128262400-128265000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:128262400-128265000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:128262400-128265200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links