Variant report

Variant	rs11742560
Chromosome Location	chr5:128325399-128325400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10036270	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10038006	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10040181	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10052566	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10065480	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10071939	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10477690	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10478827	0.85[AMR][1000 genomes]
rs11740497	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11743701	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11749027	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13156417	0.85[AMR][1000 genomes]
rs13359335	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13436689	0.85[AMR][1000 genomes]
rs1421889	0.85[AMR][1000 genomes]
rs17617241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17617329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679250	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28548714	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35791995	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3851463	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3886286	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3886288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859805	0.87[AFR][1000 genomes]
rs6863819	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6867677	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6873224	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6877556	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725037	0.87[AMR][1000 genomes]
rs7730969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7735034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285913	0.85[AMR][1000 genomes]
rs9327500	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9327503	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9686953	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882843	chr5:128325025-128367988	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882844	chr5:128325025-128377555	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882845	chr5:128325025-128404226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128309600-128338200	Weak transcription	Left Ventricle	heart
2	chr5:128320800-128328000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:128321000-128335000	Weak transcription	Fetal Heart	heart
4	chr5:128324200-128327000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:128325000-128326400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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