Variant report

Variant	rs10072652
Chromosome Location	chr5:146839364-146839365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10079318	0.82[YRI][hapmap]
rs12054712	0.80[JPT][hapmap];0.96[YRI][hapmap];0.80[ASN][1000 genomes]
rs17106769	0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs4705171	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146835800-146840200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:146835800-146858800	Weak transcription	NH-A	brain
3	chr5:146836000-146841400	Weak transcription	Osteobl	bone
4	chr5:146836000-146841800	Weak transcription	NHDF-Ad	bronchial
5	chr5:146836000-146842200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:146836000-146843600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:146836000-146844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:146836000-146845400	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:146836200-146839600	Weak transcription	NHLF	lung
10	chr5:146836200-146840000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:146836200-146841400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:146836200-146844000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:146836200-146845200	Weak transcription	Brain Germinal Matrix	brain
14	chr5:146836200-146845200	Weak transcription	Ovary	ovary
15	chr5:146836200-146846200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:146836200-146846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:146836200-146851600	Weak transcription	Fetal Stomach	stomach
18	chr5:146836400-146845000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:146837200-146839800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr5:146837600-146840000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:146838400-146839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:146838400-146839800	Enhancers	HSMMtube	muscle
23	chr5:146838400-146844200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:146838400-146846000	Weak transcription	Left Ventricle	heart
25	chr5:146838600-146839600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:146838800-146839400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:146838800-146839800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:146839000-146839400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:146839000-146839400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:146839000-146839800	Enhancers	Rectal Smooth Muscle	rectum
31	chr5:146839200-146839400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:146839200-146839600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr5:146839200-146839600	Enhancers	Aorta	Aorta
34	chr5:146839200-146839800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:146839200-146840000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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