Variant report

Variant	rs17106769
Chromosome Location	chr5:146846799-146846800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10072652	0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10075216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10079318	0.82[YRI][hapmap]
rs12054712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705171	0.86[YRI][hapmap]
rs7734086	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs958677	0.96[CEU][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv992285	chr5:146843809-146854803	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146835800-146858800	Weak transcription	NH-A	brain
2	chr5:146836200-146851600	Weak transcription	Fetal Stomach	stomach
3	chr5:146839600-146851600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:146839600-146852200	Weak transcription	Aorta	Aorta
5	chr5:146840000-146859200	Weak transcription	NHLF	lung
6	chr5:146841200-146847200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:146842600-146857600	Weak transcription	Osteobl	bone
8	chr5:146842800-146851600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:146843800-146852000	Weak transcription	Fetal Brain Male	brain
10	chr5:146844400-146847400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:146844400-146857800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:146845400-146847000	Enhancers	Colon Smooth Muscle	Colon
13	chr5:146845400-146847000	Enhancers	HUVEC	blood vessel
14	chr5:146845400-146850400	Weak transcription	Brain Germinal Matrix	brain
15	chr5:146845400-146851800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:146845600-146847600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:146845800-146847000	Enhancers	Ovary	ovary
18	chr5:146845800-146847200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:146845800-146847600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:146845800-146849000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:146846000-146847600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:146846000-146847600	Enhancers	Fetal Muscle Leg	muscle
23	chr5:146846000-146848800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:146846000-146849000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:146846200-146847400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:146846200-146849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr5:146846400-146846800	Enhancers	Rectal Smooth Muscle	rectum
28	chr5:146846400-146847600	Enhancers	Fetal Heart	heart
29	chr5:146846400-146851600	Weak transcription	Psoas Muscle	Psoas
30	chr5:146846600-146847000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:146846600-146847400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr5:146846600-146848600	Weak transcription	Right Atrium	heart
33	chr5:146846600-146849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:146846600-146849400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr5:146846600-146849800	Weak transcription	Left Ventricle	heart
36	chr5:146846600-146852200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:146846600-146858000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:146846600-146863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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