Variant report

Variant	rs958677
Chromosome Location	chr5:146862229-146862230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10075216	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12054712	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1368366	0.80[TSI][hapmap]
rs17106769	0.96[CEU][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7706630	0.80[TSI][hapmap]
rs7734086	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146846600-146863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
3	chr5:146856800-146863400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:146857000-146862800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:146858400-146865000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:146858400-146865200	Weak transcription	Right Atrium	heart
7	chr5:146858800-146865000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:146859400-146863800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:146859600-146863600	Weak transcription	Fetal Brain Female	brain
10	chr5:146859600-146864200	Weak transcription	Small Intestine	intestine
11	chr5:146859600-146864400	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:146859800-146863400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:146859800-146863800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:146859800-146863800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:146859800-146863800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:146860000-146863400	Weak transcription	Aorta	Aorta
17	chr5:146860000-146863400	Weak transcription	Fetal Brain Male	brain
18	chr5:146860000-146863400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:146860000-146863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:146860200-146862400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:146860200-146862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:146860200-146865400	Enhancers	NH-A	brain
23	chr5:146860200-146866400	Enhancers	HUVEC	blood vessel
24	chr5:146860200-146867800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:146860600-146864200	Enhancers	Osteobl	bone
26	chr5:146860800-146864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:146860800-146864200	Enhancers	NHDF-Ad	bronchial
28	chr5:146860800-146865400	Enhancers	Primary hematopoietic stem cells	blood
29	chr5:146861000-146863200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr5:146861000-146864600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:146861000-146865000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr5:146861000-146865000	Enhancers	Rectal Smooth Muscle	rectum
33	chr5:146861000-146865400	Enhancers	Fetal Muscle Leg	muscle
34	chr5:146861200-146862400	Enhancers	Fetal Stomach	stomach
35	chr5:146861200-146864600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr5:146861200-146864800	Enhancers	Colon Smooth Muscle	Colon
37	chr5:146861200-146864800	Enhancers	NHLF	lung
38	chr5:146861200-146866600	Enhancers	Adipose Nuclei	Adipose
39	chr5:146861200-146866800	Enhancers	Ovary	ovary
40	chr5:146861400-146862400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr5:146861400-146862600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:146861400-146862600	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr5:146861400-146863600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:146861400-146863600	Weak transcription	Left Ventricle	heart
45	chr5:146861400-146863600	Weak transcription	Lung	lung
46	chr5:146861400-146865000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr5:146861400-146865000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr5:146861600-146862400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr5:146861600-146863200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:146861600-146863800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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