Variant report

Variant	rs1368366
Chromosome Location	chr5:146866283-146866284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:146864988..146868068-chr5:146868350..146871206,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1368367	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432843	0.98[EUR][1000 genomes]
rs1432844	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2032857	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60291144	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62379598	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6580464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580466	0.84[EUR][1000 genomes]
rs6580468	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6880491	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7706630	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs958677	0.80[TSI][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
2	chr5:146860200-146866400	Enhancers	HUVEC	blood vessel
3	chr5:146860200-146867800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:146861200-146866600	Enhancers	Adipose Nuclei	Adipose
5	chr5:146861200-146866800	Enhancers	Ovary	ovary
6	chr5:146861600-146867800	Weak transcription	Spleen	Spleen
7	chr5:146864000-146866800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:146864400-146866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:146864400-146866600	Weak transcription	Stomach Mucosa	stomach
10	chr5:146864600-146867000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:146864600-146869600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:146864600-146870200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:146864600-146883000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:146864800-146870400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:146865000-146866400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:146865000-146866400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:146865200-146882600	Weak transcription	Fetal Stomach	stomach
18	chr5:146865400-146866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:146865400-146866600	Weak transcription	NHLF	lung
20	chr5:146865400-146867400	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:146865400-146870600	Weak transcription	Osteobl	bone
22	chr5:146865600-146870000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:146866000-146866400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:146866000-146867000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:146866000-146867600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:146866000-146868000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:146866200-146866600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:146866200-146866600	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:146866200-146867000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:146866200-146867800	Enhancers	Rectal Smooth Muscle	rectum
31	chr5:146866200-146868000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:146866200-146868000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr5:146866200-146868000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr5:146866200-146868000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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