Variant report

Variant	rs62379598
Chromosome Location	chr5:146882416-146882417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1368366	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1368367	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1432843	0.95[EUR][1000 genomes]
rs1432844	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032857	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60291144	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580464	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580466	0.80[EUR][1000 genomes]
rs6580468	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6880491	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7706630	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
2	chr5:146864600-146883000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:146865200-146882600	Weak transcription	Fetal Stomach	stomach
4	chr5:146866800-146882600	Weak transcription	NHLF	lung
5	chr5:146866800-146883000	Weak transcription	Ovary	ovary
6	chr5:146870800-146883000	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:146871400-146886400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:146871600-146887200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:146873000-146882600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:146873200-146887400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:146876400-146882600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:146878400-146883600	Weak transcription	Aorta	Aorta
13	chr5:146878800-146887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:146879800-146887000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:146881800-146882800	Weak transcription	Brain Germinal Matrix	brain
16	chr5:146882000-146886600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:146882400-146882600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:146882400-146883000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr5:146882400-146883400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:146882400-146885200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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