Variant report

Variant	rs7706630
Chromosome Location	chr5:146890363-146890364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1368366	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1368367	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1432843	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1432844	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032857	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60291144	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62379598	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580464	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580466	0.84[EUR][1000 genomes]
rs6580468	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6880491	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs958677	0.80[TSI][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146889800-146890600	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr5:146890000-146890400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:146890000-146890400	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr5:146890200-146890400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:146890200-146890400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:146890200-146890400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr5:146890200-146890400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr5:146890200-146890400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:146890200-146890400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:146890200-146890400	Enhancers	Fetal Brain Male	brain
11	chr5:146890200-146890600	Enhancers	Colon Smooth Muscle	Colon
12	chr5:146890200-146891000	Enhancers	Fetal Stomach	stomach
13	chr5:146890200-146891400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:146890200-146892000	Enhancers	Rectal Smooth Muscle	rectum
15	chr5:146890200-146892200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:146890200-146895200	Weak transcription	HUVEC	blood vessel
17	chr5:146890200-146901200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:146890200-146901200	Weak transcription	NHLF	lung
19	chr5:146890200-146901600	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links