Variant report

Variant	rs6880491
Chromosome Location	chr5:146871553-146871554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1368366	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1368367	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1432843	0.98[EUR][1000 genomes]
rs1432844	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2032857	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60291144	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62379598	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580466	0.84[EUR][1000 genomes]
rs6580468	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7706630	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
2	chr5:146864600-146883000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:146865200-146882600	Weak transcription	Fetal Stomach	stomach
4	chr5:146866800-146882600	Weak transcription	NHLF	lung
5	chr5:146866800-146883000	Weak transcription	Ovary	ovary
6	chr5:146869800-146872200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:146870000-146871600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:146870200-146871600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:146870200-146871600	Enhancers	HUVEC	blood vessel
10	chr5:146870400-146871600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:146870800-146880400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:146870800-146883000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:146871000-146871600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:146871000-146871800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:146871000-146872600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:146871200-146871800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:146871200-146872200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:146871400-146871600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:146871400-146872600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:146871400-146886400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links