Variant report

Variant	rs10072971
Chromosome Location	chr5:52836366-52836367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10057745	0.84[ASN][1000 genomes]
rs10063311	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1030228	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12521381	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1465445	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1532163	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1552649	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1559266	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs187659	0.82[EUR][1000 genomes]
rs256083	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs256087	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs256107	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256108	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256110	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs256112	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs256117	0.82[EUR][1000 genomes]
rs2607511	0.81[EUR][1000 genomes]
rs2636991	0.82[EUR][1000 genomes]
rs31303	0.82[EUR][1000 genomes]
rs370594	0.82[EUR][1000 genomes]
rs372006	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs372135	0.82[EUR][1000 genomes]
rs375956	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs381374	0.83[EUR][1000 genomes]
rs403207	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs423014	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs424955	0.83[EUR][1000 genomes]
rs429384	0.82[EUR][1000 genomes]
rs430427	0.82[EUR][1000 genomes]
rs435187	0.81[EUR][1000 genomes]
rs439641	0.81[EUR][1000 genomes]
rs549131	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7728496	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7731940	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs786335	0.82[EUR][1000 genomes]
rs889291	0.89[ASN][1000 genomes]
rs889292	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs923609	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52835400-52838800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:52835600-52838800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:52836200-52839000	Weak transcription	HSMM	muscle

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