The 2.0 version of rSNPBase

Variant report

Variant rs429384
Chromosome Location chr5:52908205-52908206
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52860000-52909000 Weak transcription Small Intestine intestine
2 chr5:52889800-52920800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:52890000-52912400 Weak transcription K562 blood
4 chr5:52890200-52920000 Weak transcription HepG2 liver
5 chr5:52899200-52908400 Weak transcription Rectal Smooth Muscle rectum
6 chr5:52899200-52908400 Weak transcription HMEC breast
7 chr5:52899200-52910200 Weak transcription Brain Germinal Matrix brain
8 chr5:52899400-52908400 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr5:52899400-52908400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr5:52899400-52928400 Weak transcription Fetal Heart heart
11 chr5:52900800-52908600 Weak transcription A549 lung
12 chr5:52900800-52909000 Weak transcription Esophagus oesophagus
13 chr5:52900800-52910200 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr5:52900800-52911800 Weak transcription Brain Substantia Nigra brain
15 chr5:52900800-52936600 Weak transcription NHEK skin
16 chr5:52901000-52932600 Weak transcription Aorta Aorta
17 chr5:52901400-52920600 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr5:52901600-52918000 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr5:52901600-52919600 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr5:52901800-52927000 Weak transcription Pancreas Pancrea
21 chr5:52902600-52909000 Weak transcription H1 Cell Line embryonic stem cell
22 chr5:52902600-52919600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr5:52902600-52920800 Weak transcription Fetal Intestine Small intestine
24 chr5:52902600-52927000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr5:52902800-52908400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr5:52902800-52918800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr5:52902800-52920800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:52902800-52926400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr5:52903000-52908400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr5:52903000-52927000 Weak transcription Left Ventricle heart
31 chr5:52903000-52943800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:52903200-52909200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr5:52903200-52910400 Weak transcription Brain Hippocampus Middle brain
34 chr5:52903200-52918200 Weak transcription Liver Liver
35 chr5:52903200-52918400 Weak transcription Primary B cells from cord blood blood
36 chr5:52903200-52918800 Weak transcription Duodenum Mucosa Duodenum
37 chr5:52903200-52919800 Weak transcription Fetal Muscle Leg muscle
38 chr5:52903200-52920800 Weak transcription Stomach Smooth Muscle stomach
39 chr5:52903200-52926800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr5:52903200-52939200 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr5:52903400-52910200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr5:52903600-52909000 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr5:52903600-52926800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr5:52904200-52936800 Weak transcription NHDF-Ad bronchial
45 chr5:52904400-52908800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr5:52904400-52909000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr5:52904400-52918200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr5:52904400-52920400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
49 chr5:52904400-52966600 Weak transcription Osteobl bone
50 chr5:52904600-52908400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015