Variant report

Variant	rs10073441
Chromosome Location	chr5:107218799-107218800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107218138..107220384-chr5:107223112..107225294,2	MCF-7	breast:
2	chr5:107194483..107196871-chr5:107218196..107219851,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10040275	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10045437	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10072706	0.81[CEU][hapmap]
rs11740286	0.85[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17160714	0.81[CEU][hapmap]
rs58854937	0.94[ASN][1000 genomes]
rs6880495	0.97[ASN][1000 genomes]
rs72795949	0.91[EUR][1000 genomes]
rs7726739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs9328023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9328024	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107194000-107219000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:107195400-107220000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
4	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:107197800-107219000	Weak transcription	Gastric	stomach
6	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:107203600-107218800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107206200-107221800	Weak transcription	HUVEC	blood vessel
11	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
12	chr5:107211000-107219200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:107211000-107220400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:107211600-107221400	Weak transcription	Thymus	Thymus
15	chr5:107211800-107219600	Weak transcription	Esophagus	oesophagus
16	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
17	chr5:107212400-107223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:107213000-107223200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:107213200-107219400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:107213200-107225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:107213600-107223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:107215000-107219000	Weak transcription	Brain Anterior Caudate	brain
23	chr5:107216000-107219000	Weak transcription	Fetal Intestine Small	intestine
24	chr5:107216000-107223000	Weak transcription	Ovary	ovary
25	chr5:107216200-107219400	Weak transcription	Lung	lung
26	chr5:107216200-107223000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:107216400-107219200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:107216400-107219400	Weak transcription	Fetal Intestine Large	intestine
29	chr5:107216400-107221000	Weak transcription	Primary T cells from cord blood	blood
30	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
31	chr5:107216600-107226200	Weak transcription	Primary T cells fromperipheralblood	blood

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