Variant report

Variant	rs17160714
Chromosome Location	chr5:107241795-107241796
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10040275	0.84[AMR][1000 genomes]
rs10045437	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10069962	1.00[JPT][hapmap]
rs10072706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10073441	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs11738072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11740286	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs6880495	0.83[AFR][1000 genomes]
rs7726739	0.81[CEU][hapmap]
rs9328023	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9328024	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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