Variant report

Variant	rs10069962
Chromosome Location	chr5:107291824-107291825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053821	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066241	1.00[CHB][hapmap]
rs10070308	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10072411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072706	1.00[JPT][hapmap]
rs10479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738072	1.00[JPT][hapmap]
rs17160714	1.00[JPT][hapmap]
rs17371693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17437183	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs17437482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28457651	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520800	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4957731	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72795980	0.95[ASN][1000 genomes]
rs7701221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107287400-107292000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:107287400-107294200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
7	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
8	chr5:107287600-107293200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
10	chr5:107289200-107293600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107290400-107292200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107290400-107292600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:107291200-107292800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:107291400-107292600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:107291400-107292600	Weak transcription	Dnd41	blood
17	chr5:107291600-107295400	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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