Variant report

Variant	rs10479417
Chromosome Location	chr5:107287114-107287115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107285811..107288026-chr5:107290020..107292465,2	K562	blood:
2	chr5:107285431..107288026-chr5:107290064..107292465,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10053821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066241	1.00[CHB][hapmap]
rs10069962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070308	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10072411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17371693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17437183	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17437482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28457651	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520800	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4957731	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72795980	0.95[ASN][1000 genomes]
rs7701221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107273600-107287800	Weak transcription	Gastric	stomach
2	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
3	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
4	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:107285200-107287400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:107285200-107287600	Enhancers	Fetal Thymus	thymus
10	chr5:107285200-107287600	Enhancers	Thymus	Thymus
11	chr5:107285600-107287200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107285800-107288600	Enhancers	Primary T cells from cord blood	blood
13	chr5:107286000-107287800	Enhancers	Dnd41	blood
14	chr5:107286000-107290000	Weak transcription	NHDF-Ad	bronchial
15	chr5:107286400-107287200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:107286600-107287400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:107286600-107287400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:107286600-107287400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr5:107286600-107287400	Strong transcription	Aorta	Aorta
20	chr5:107286600-107287400	Enhancers	Left Ventricle	heart
21	chr5:107286600-107287400	Enhancers	Lung	lung
22	chr5:107286600-107287400	Enhancers	Psoas Muscle	Psoas
23	chr5:107286600-107287400	Enhancers	Right Atrium	heart
24	chr5:107286600-107287600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr5:107286800-107287600	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr5:107286800-107287600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr5:107286800-107291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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